What doctor cannot see
Only git's own records and two file formats that write their own path. Anything else that points into a directory, including a line in a shell profile or a process whose working directory is inside it, is invisible to the report.
Only git's own records and two file formats that write their own path. Anything else that points into a directory, including a line in a shell profile or a process whose working directory is inside it, is invisible to the report.
Caveats
What it cannot see, and what a copy cannot carry.
What a clone cannot carry
Absolute paths inside files that `doctor` does not know the format of. A compiled artifact with a build path baked into it, a database with a stored data directory, a lockfile that recorded where it ran. They are copied faithfully and they still name the original.